PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0068s0233.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 585aa    MW: 63175.4 Da    PI: 7.8144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0068s0233.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31333391259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Kaladp0068s0233.1.p 333 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILITTYEGNHNHP 391
                          7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33317393IPR003657WRKY domain
SuperFamilySSF1182909.15E-28325393IPR003657WRKY domain
PROSITE profilePS5081130.136327393IPR003657WRKY domain
SMARTSM007741.7E-37332392IPR003657WRKY domain
PfamPF031061.7E-26334391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDGGWGVTTV AEADRSVIPF FASKPSVISG MKIFPVSLSG RRERDEPEES GRRVVCEVDF  60
FSGEREIKKA AAAARGGEKS GVSVKEEVLH GEPSKSDLNV NTRLNLLTAN AGSDQSTVED  120
GSSLDDKRAR TSQVSQMQME LGRLNAENQR LKEMLSQVSH NYQALQMHLI AFMQQHQQQQ  180
QQQQPVPVLE SAVNHEVGGR KSEEMVSAAA VPRQSLNLGP GSVTQEQPDE LSNSSSGERT  240
RSGSLHNKNN LEIVSKRPRS DQENSRDGKG LVDREESPDS ETHEWSRSSK AAKLRDNENA  300
VCGAKLVDQQ ATEATMRKAR VSVRARSEAP LISDGCQWRK YGQKMAKGNP CPRAYYRCTM  360
AVGCPVRKQV QRCAEDTTIL ITTYEGNHNH PLPPAAVAMA STTSAAASML LSGSMSSTDG  420
LMNPNLLARA ILPPCSSNIA TISASAPFPT ITLDLTHSPN PLHPQRQQQQ QQQPFSMPAA  480
NNTFPQILGQ ALYNQSRFSG LQLSQDSNPT SKGLPLPIPI PPTSLAQVQH TSFADTVSAA  540
TAAITNDPNF TALIAAAISS FISANNKQPN STSSNPNTTT QQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23319395176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026134.10.0WRKY family transcription factor
SwissprotQ9XEC31e-141WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLA0A061GGS50.0A0A061GGS5_THECC; WRKY family transcription factor
STRINGVIT_10s0116g01200.t011e-175(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-120WRKY DNA-binding protein 31